simkaMinCore1
Comparative metagenomics method dedicated to ngs datasets
Usage
simkaMin [option]
Overview
[Distance computation options]
- sketch
-
: transform datasets in small sketches of k-mers and their abundance
- distance
-
: compute Jaccard and Bray-Curtis distances between sketches
[Distance matrix manipulation options]
- export
-
: export distance matrices stored in binary format
[Sketch options]
- append
-
: merge multiple sketch files into a single one
- info
-
: list datasets contained in a sketch file