sim_reads1
Convert fastq sequences to fasta sequences.
Usage
sim_reads ref.fa
reads.fa
Overview
sim_reads - Simulate sequencing reads from references.
Allowed Options:
--deptharg (=30)-
sequencing depth of the sample
--error_ratearg (=0.01)-
error rate
--read_lengtharg (=100)-
read length
-
--paired -
if paired-end
--sdarg (=-1)-
sd
--insert_distancearg (=500)-
insert distance
-
--print_correct -
output correct reads