NAME
sim2gff - Converts SIM file into GFF formatted records
SYNOPSIS
sim2gff [-frxyHh] sim_file > gff_file
DESCRIPTION
This manual page documents briefly the sim2gff command.
sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot).
OPTIONS
- -h, --help
-
Show summary of options.
- -f
-
Output is written to a file named <sim_file>.gff.
- -r
-
Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis).
- -x <name>
-
Specify the species name for species1 (default: "Seq1").
- -y <name>
-
Specify the species name for species2 (default: "Seq2").
- -H
-
Use the fasta file headers for species labels.
EXIT STATUS
The following perl-like exit status are returned:
0 Error
1 Successful completion
SEE ALSO
AUTHOR
sim2gff was written by Thomas Wiehe <[email protected]>.
This manual page was written by Nelson A. de Oliveira <[email protected]>, for the Debian project (but may be used by others).