sga2gff.pl1
Convert sga format into gff format
Overview
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sga2gff.pl [options] <SGA file>
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where options are:
-h|--help-
Show this stuff
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--db <path> -
Use <path> to locate Chrom Id Storable File 'chro_idx.nstorage'
-l|--taglen <taglen>-
Set Read length <taglen>
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-x -
Expand SGA lines into multiple GFF lines
-e|--ext <ext_flag>-
Use SGA 6th field to set GFF feature field and store SGA feature into GFF source field