---
name: "sga2gff.pl"
section: "1"
platform: "linux"
package: "chip-seq"
version: "1.5.5-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/sga2gff.pl"
---

# sga2gff.pl(1)

Convert SGA format into GFF format

## NAME

sga2gff.pl - Convert SGA format into GFF format

## DESCRIPTION

-

  sga2gff.pl \[options\] \<SGA file\>

-

  where options are:

- **-h**\|--help

  Show this stuff

- **--db** \<path\>

  Use \<path\> to locate Chrom Id Storable File 'chro\_idx.nstorage'

- **-l**\|--taglen \<taglen\>

  Set Read length \<taglen\>

- **-x**

  Expand SGA lines into multiple GFF lines

- **-e**\|--ext \<ext\_flag\>

  Use SGA 6th field to set GFF feature field and store SGA feature into GFF source field

## AUTHOR

 This manpage was written by Andreas Tille for the Debian distribution and\
  can be used for any other usage of the program.