sga-align1
Align reads to contigs
Usage
sga-align [options]
<contigs
file>
<input
files>
Overview
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Options
-
--name=STR -
Use STR as the basename for the output files.
-
-t,--threads=N -
Use N threads when running bwa.
Releases
Unchanged in 5 releases since Debian 9 (Stretch).