NAME
seqsero - Salmonella serotyping from genome sequencing data
SYNOPSIS
seqsero -m <data_type> -i <input_data> [-b <BWA_algorithm>]
OPTIONS
- -h, --help
-
show this help message and exit
- -m {1,2,3,4}
-
<int>: '1'(pair-end reads, interleaved),'2'(pair-end reads, seperated),'3'(single-end reads), '4'(assembly)
- -i I [I ...]
-
<string>: path/to/input_data
- -b {sam,mem}
-
<string>: 'sam'(bwa samse/sampe), 'mem'(bwa mem), default=sam
AUTHOR
SeqSero was developed by Shaokang Zhang ([email protected]) and Xiangyu Deng ([email protected])
Contact email:[email protected]
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.