---
name: "seqdiff"
section: "1"
platform: "linux"
package: "pullseq"
version: "1.0.2-5"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/seqdiff"
---

# seqdiff(1)

\<short\_description\>

## NAME

seqdiff - \<short\_description\>

## DESCRIPTION

seqdiff - a bioinformatics tool for comparing sequences in two files

(Written by bct - 2013) Usage: seqdiff **-1** \<first input fasta/fastq file\> **-2** \<second fasta/fastq file\>

-

  Options:

- **-1**, **--first**,

  First sequence file (required)

- **-2**, **--second**,

  Second sequence file (required)

- **-a**, **--a\_output**,

  File name for uniques from first file

- **-b**, **--b\_output**,

  File name for uniques from second file

- **-c**, **--c\_output**,

  File name for common entries

- **-d**, **--headers**,

  Compare headers instead of sequences (default: false)

**-s**, **--summary**, Just show summary stats? (default: false)

- **-h**, **--help**,

  Display this help and exit

- **-v**, **--verbose**,

  Print extra details during the run

- **--version**,

  Output version information and exit

## AUTHOR

 This manpage was written by Nilesh Patra for the Debian distribution and\
  can be used for any other usage of the program.