segmentIhs1

Usage

Overview

Creates genomic segments (bed file) for regions with high wcFst

Options

Output : 8 columns :                 
     1. Seqid                        
     2. Start (zero based)           
     3. End   (zero based)           
     4. Average iHS                  
     5. Average high Fst (iHS > -s)  
     6. N iHS values in segment      
     7. N high iHS values in segment 
     8. Segment length               
required: -f            -- Output from normalizeIHS     
optional: -s            -- High absolute iHS cutoff [2] 
Type: statistics

Exit status

0

Success

not 0

Failure

Other