---
name: "scopparse"
section: "1e"
platform: "linux"
package: "embassy-domainatrix"
version: "0.1.660-5"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/scopparse/1e"
---

# scopparse(1e)

Generate DCF file from raw SCOP files.

## NAME

scopparse - Generate DCF file from raw SCOP files.

## SYNOPSIS

**scopparse** **-classfile** *infile* **-desinfile** *infile* **-nosegments** *boolean* **-nomultichain** *boolean* \[**-nominor** *boolean*\] **-dcffile** *outfile*

**scopparse** **-help**

## DESCRIPTION

**scopparse** is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Utils:Database creation" command group(s).

## OPTIONS

### Input section

- **-classfile** *infile*

  This option specifies the name of raw SCOP classification file dir.cla.scop.txt\_X.XX (input). This is the raw SCOP classification file available at http://scop.mrc-lmb.cam.ac.uk/scop/parse/dir.cla.scop.txt\_1.57.

- **-desinfile** *infile*

  This option specifies the name of raw SCOP description file dir.des.scop.txt\_X.XX (input). This is the raw SCOP description file available at http://scop.mrc-lmb.cam.ac.uk/scop/parse/dir.des.scop.txt\_1.57.

### Required section

- **-nosegments** *boolean*

  This option specifies whether to omit domains comprising of more than one segment. This is necessary if a continuous residue sequence is required. Default value: N

- **-nomultichain** *boolean*

  This option specifies whether to omit domains comprising segments from more than one chain. This is necessary if a continuous residue sequence is required. Default value: N

### Additional section

- **-nominor** *boolean*

  This option specifies whether to omit domains from minor classes (defined as anything not in class 'All alpha proteins', 'All beta proteins', 'Alpha and beta proteins (a/b)' or 'Alpha and beta proteins (a+b)'). This is necessary or appropriate for many analyses. Default value: N

### Output section

- **-dcffile** *outfile*

  This option specifies the name of SCOP DCF file (domain classification file) (output). A 'domain classification file' contains classification and other data for domains from the SCOP or CATH databases. The file is generated by using DOMAINER and is in DCF format (EMBL-like). Domain sequence information can be added to the file by using DOMAINSEQS. Default value: test.scop

## BUGS

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group\_id=93650&atid=605031).

## SEE ALSO

scopparse is fully documented via the **tfm**(1) system.

## AUTHOR

**Debian Med Packaging Team** \<debian-med-packaging@lists.alioth.debian.org\>

Wrote the script used to autogenerate this manual page.

## COPYRIGHT

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.