scftool1
Provides a set of tools useful when working with scf trace files.
Options
Available tools:
- convert
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Cuts the given range out of an SCF file and makes a new SCF out of it.
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To get help more specific help please type scftool convert
- cut
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Cuts a given range of a SCF file into a new SCF file.
- remix
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Combines trace information of a SCF file with new bases, qualities and peak values (either in FASTA or PHD format) into a new SCF file.
Examples
Example for cut:
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scftool cut infile lower_base_bound upper_base_bound outfile
Usage of remix (when using PHD files as input for bases, quals and peaks):
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scftool remix scf_infile phd_infile scf_outfile
Usage of remix (when using FASTA files as input for bases, quals and peaks):
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scftool remix scf_infile bases_infile quals_infile peaks_infile scf_outfile