NAME
samtools.pl - helper script for SAMtools
SYNOPSIS
samtools.pl <command> [<arguments>]
DESCRIPTION
helper script for SAMtools
- Command:
-
varFilter filtering SNPs and short indels
-
pileup2fq generate fastq from `pileup -c'
-
showALEN print alignment length (ALEN) following CIGAR
AUTHOR
THe software was written by Heng Li <[email protected]>
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.