---
name: "saint-spc-noctrl"
section: "1"
platform: "linux"
package: "saint"
version: "2.5.0+dfsg-4+b3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/saint-spc-noctrl"
---

# saint-spc-noctrl(1)

run SAINT scoring algorithm for protein-protein interaction data using label free quantitative proteomics data

## NAME

saint-spc-noctrl - run SAINT scoring algorithm for protein-protein interaction data using label free quantitative proteomics data

## SYNOPSIS

**saint-spc-noctrl** *\[interactionFile\] \[preyFile\] \[baitFile\] \[nburnin\] \[niter\] \[fthres\] \[fgroup\] \[var\] \[normalize\]*

## DESCRIPTION

**-burnin** and iter: burn-in period and main iteration of MCMC

**-fthres**: frequency threshold above which probability is set to 0

**-fgroup**: frequency boundary dividing high and low frequency groups

**-var**: binary \[0/1\] indicator for modeling variance of the count data distributions

**-normalize**: whether to normalize the counts by total spectral counts

## SEE ALSO

You can download a PDF file with more detailed instructions from

-

  http://sourceforge.net/projects/saint-apms/files/

which is called saint-vignette-\<YYYYMonDD\>.pdf.