NAME
run_tipp_tool.py - helper tool to convert a classification file into a profile
DESCRIPTION
usage: run_tipp_tool.py [-h] [-g GENE] -a ACTION [-o OUTPUT] [-p PREFIX]
-
[-i INPUT] [-t THRESHOLD]
Performs various tools for TIPP.
optional arguments:
- -h, --help
-
show this help message and exit
- -g GENE, --gene GENE
-
use GENE's reference package
- -a ACTION, --action ACTION
-
Run ACTION
- -o OUTPUT, --output OUTPUT
-
OUTPUT directory
- -p PREFIX, --prefix PREFIX
-
PREFIX
- -i INPUT, --input INPUT
-
INPUT destination
- -t THRESHOLD, --threshold THRESHOLD
-
threshold for classification
-
[-i INPUT] [-t THRESHOLD]