NAME
runMetaBat.sh - Wrapper for MetaBAT
DESCRIPTION
runMetaBat.sh <select metabat options> assembly.fa sample1.bam [ sample2.bam ...]
OPTIONS
You can specify any metabat options EXCEPT:
-i --inFile
-o --outFile
-a --abdFile
Also for depth calculations stage only, you can set the following environmental variables:
- PCTID=97
-
-- reads below this threshold will be discarded
- BADMAP=0
-
-- output the discarded reads to a sub directory
- MINDEPTH=1.0
-
-- require contigs to have this minimum depth to be output
For full metabat options: metabat2 -h
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.