rsem-gff3-to-gtf1
Convert gff3 files to gtf files.
Overview
usage: rsem-gff3-to-gtf [-h] [--make-genes-as-transcripts]
- [--RNA-patterns <patterns>]
-
[--extract-sequences <output.fa>] input_GFF3_file output_GTF_file
Convert GFF3 files to GTF files.
positional arguments:
- input_GFF3_file
-
Input GFF3 file.
- output_GTF_file
-
Output GTF file.
options:
-
-h, --help -
show this help message and exit
-
--make-genes-as-transcripts -
GFF3 file does not contain transcripts, make each gene as a transcript. (default: False)
-
--RNA-patterns <patterns> -
Types of RNAs to be extracted, e.g. mRNA,rRNA (default: None)
-
--extract-sequences <output.fa> -
If GFF3 file contains reference sequences, extract them to the specified file (default: None)
History
- Debian 13 (Trixie): the text shown here
- Debian 12 (Bookworm)
- Debian 11 (Bullseye)
- Debian 10 (Buster)
- Debian 9 (Stretch)
--make-genes-as-transcripts since Debian 10 (Buster).