NAME
rsem-gff3-to-gtf - Convert GFF3 files to GTF files.
DESCRIPTION
usage: rsem-gff3-to-gtf [-h] [--make-genes-as-transcripts]
- [--RNA-patterns <patterns>]
-
[--extract-sequences <output.fa>] input_GFF3_file output_GTF_file
Convert GFF3 files to GTF files.
positional arguments:
- input_GFF3_file
-
Input GFF3 file.
- output_GTF_file
-
Output GTF file.
options:
- -h, --help
-
show this help message and exit
- --make-genes-as-transcripts
-
GFF3 file does not contain transcripts, make each gene as a transcript. (default: False)
- --RNA-patterns <patterns>
-
Types of RNAs to be extracted, e.g. mRNA,rRNA (default: None)
- --extract-sequences <output.fa>
-
If GFF3 file contains reference sequences, extract them to the specified file (default: None)