---
name: "rnr-tii"
section: "1"
platform: "linux"
package: "roguenarok"
version: "1.0.1-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/rnr-tii"
---

# rnr-tii(1)

computes the taxonomic instability index

## NAME

rnr-tii - computes the taxonomic instability index

## DESCRIPTION

This is RnR-tii version 1.0 released by Andre J. Aberer in 2011-10-25.

This program computes the taxonomic instability index.

SYNTAX: rnr-tii **-i** \<bootTrees\> **-n** \<runId\> \[-w \<workingDir\>\] \[-h\] \[-x \<excludeFile\>\]

OBLIGATORY: **-i** \<bootTrees\>

-

  A collection of bootstrap trees.

**-n** \<runId\>

-

  An identifier for this run.

OPTIONAL **-z** \<z\>

-

  The exponent used in the TII formula. Use small values to emphasize close relationships and vice versa. DEFAULT: 2

**-w** \<workDir\>

-

  A working directory where output files are created.

**-x** \<excludeFile\>

-

  Exclude the taxa in this file (one taxon per line) prior to computing the TII.

**-h**

-

  This help file.

## AUTHOR

This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program.