---
name: "rnr-prune"
section: "1"
platform: "linux"
package: "roguenarok"
version: "1.0.1-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/rnr-prune"
---

# rnr-prune(1)

prunes a list of taxa from a bootstrap tree or a single tree with branch lengths

## NAME

rnr-prune - prunes a list of taxa from a bootstrap tree or a single tree with branch lengths

## DESCRIPTION

This is RnR-prune version 1.0 released by Andre J. Aberer in 2011-10-25.

This program prunes a list of taxa from a bootstrap tree or a single tree with branch lengths (such as a best-known ML/MP-tree).

SYNTAX: rnr-prune \[-i \<bootTrees\> \| **-t** \<treeFile\>\] **-x** \<excludeFile\> **-n** \<runId\> \[-w \<workingDir\>\] \[-h\]

-

  OBLIGATORY:

**-x** \<excludeFile\>

-

  A list of taxa (one taxon per line) to prune from either the bootstrap trees or the single best-known tree.

**-i** \<bootTrees\>

-

  A collection of bootstrap trees.

**-t** \<treeFile\>

-

  A single tree with branch lengths. Use either this flag or the **-i** flag.

**-n** \<runId\>

-

  An identifier for this run.

-

  OPTIONAL:

**-w** \<workDir\>

-

  A working directory where output files are created.

**-h**

-

  This help file.

## AUTHOR

This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program.