---
name: "rnr-mast"
section: "1"
platform: "linux"
package: "roguenarok"
version: "1.0.1-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/rnr-mast"
---

# rnr-mast(1)

computes maximum agreement trees for unrooted input sets

## NAME

rnr-mast - computes maximum agreement trees for unrooted input sets

## DESCRIPTION

This is RnR-mast version 1.0 released by Andre J. Aberer in 2011-10-25.

This program computes maximum agreement trees for unrooted input sets.

SYNTAX: rnr-mast **-i** \<bootTrees\> **-n** \<runId\> \[-w \<workingDir\>\] \[-h\] \[-a\] \[-x \<excludeFile\>\]

OBLIGATORY: **-i** \<bootTrees\>

-

  A collection of bootstrap trees.

**-n** \<runId\>

-

  An identifier for this run.

OPTIONAL **-a**

-

  Compute all possible MAST trees. Without this flag, you will

-

  only get a few MASTs that are easy to compute. As there may be an exponential number of MASTs, use this option with care.

**-w** \<workDir\>

-

  A working directory where output files are created.

**-x** \<excludeFile\>

-

  Exclude the taxa in this file (one taxon per line)

-

  prior to computing the MAST. If you compute all MASTs anyway, this option is option will not be useful. However, you can use this option to speed up things.

**-h**

-

  This help file.

## AUTHOR

This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program.