---
name: "rnr-lsi"
section: "1"
platform: "linux"
package: "roguenarok"
version: "1.0.1-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/rnr-lsi"
---

# rnr-lsi(1)

computes three flavors of leaf stability index for each taxon

## NAME

rnr-lsi - computes three flavors of leaf stability index for each taxon

## DESCRIPTION

This is RnR-lsi version 1.0.1 released by Andre J. Aberer in 2021-06-07.

This program computes three flavors of leaf stability index for each taxon.

SYNTAX: rnr-lsi **-i** \<bootTrees\> **-n** \<runId\> \[-w \<workingDir\>\] \[-h\]

-

  OBLIGATORY:

**-i** \<bootTrees\>

-

  A collection of bootstrap trees.

**-n** \<runId\>

-

  An identifier for this run.

-

  OPTIONAL:

**-x** \<excludeFile\>

-

  Prune the taxa in the file first (one taxon per line), before computing the lsi.

**-w** \<workDir\>

-

  A working directory where output files are created.

**-h**

-

  This help file.

## AUTHOR

This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program.