---
name: "rgfa-findcrisprs"
section: "1"
platform: "linux"
package: "ruby-rgfa"
version: "1.3.1+dfsg-3"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/rgfa-findcrisprs"
---

# rgfa-findcrisprs(1)

find CRISPRs in assembly graphs

## NAME

rgfa-findcrisprs - find CRISPRs in assembly graphs

## SYNOPSIS

**rgfa-findcrisprs** \<gfa\>

## DESCRIPTION

Finds CRISPRs given in assembly graphs specified by a GFA file. CRISPRs have a structure ARU1RU..RUnRB where \|U\|~\|R\| in \[24..50\].

## SEE ALSO

[**gfadiff**(1)](/gfadiff/1.md), [**rgfa-mergelinear**(1)](/rgfa-mergelinear/1.md), [**rgfa-simdebruijn**(1)](/rgfa-simdebruijn/1.md)

## BUGS

Please report bugs to the RGFA issue tracker:  \<https://github.com/ggonnella/rgfa/issues\>