rgfa-findcrisprs(1)

find CRISPRs in assembly graphs

NAME

rgfa-findcrisprs - find CRISPRs in assembly graphs

SYNOPSIS

rgfa-findcrisprs <gfa>

DESCRIPTION

Finds CRISPRs given in assembly graphs specified by a GFA file. CRISPRs have a structure ARU1RU..RUnRB where |U|~|R| in [24..50].

SEE ALSO

gfadiff(1), rgfa-mergelinear(1), rgfa-simdebruijn(1)

BUGS

Please report bugs to the RGFA issue tracker: <https://github.com/ggonnella/rgfa/issues>

History

Debian 13 (Trixie): the text shown here
Debian 12 (Bookworm) to Debian 11 (Bullseye)
Debian 10 (Buster)
Debian 9 (Stretch)