---
name: "remove_short_seqs"
section: "1"
platform: "linux"
package: "cct"
version: "1:1.0.3-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/remove_short_seqs"
---

# remove\_short\_seqs(1)

visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

## NAME

remove\_short\_seqs - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

## DESCRIPTION

usage: remove\_short\_seqs \[\[-i input\] \[-l length\] \| \[-h\]\] **-i** DIRECTORY the input directory of GenBank files with .gbk extensions **-l** INTEGER remove GenBank files that describe sequences shorter than this length

### USAGE:

-

  remove\_short\_seqs **-i** DIR **-l** INTEGER

### DESCRIPTION:

-

  Removes GenBank files that are shorter than the specified length from the provided directory.

### REQUIRED ARGUMENTS:

**-i**, **--input** DIR

-

  Input directory of GenBank files with .gbk extensions.

**-l**, **--length** INTEGER

-

  Remove GenBank files that describe sequences shorter than this length.

### OPTIONAL ARGUMENTS:

**-h**, **--help**

-

  Show this message

### EXAMPLE:

-

  remove\_short\_seqs **-i** my\_project/comparison\_genomes **-l** 100000

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.