---
name: "rearrange.pl"
section: "1"
platform: "linux"
package: "murasaki-common"
version: "1.68.6-14"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/rearrange.pl"
---

# rearrange.pl(1)

## NAME

rearrange.pl -- rearrange an anchors file according to some rules

## SYNOPSIS

rearrange.pl \<input anchors\> \<permutation\> eg. rearrange.pl myalign.anchors 2 3 1 4

## OPTIONS

\--output - force output to go to some particular file (otherwise it's automatically derived from the input filenames)