---
name: "reapr-seqrename"
section: "1"
platform: "linux"
package: "reapr"
version: "1.0.18+dfsg-7"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/reapr-seqrename"
---

# reapr-seqrename(1)

renames all sequences in a BAM file

## NAME

reapr-seqrename - renames all sequences in a BAM file

## SYNOPSIS

**reapr seqrename** \<renamefile\> \<in.bam\> \<out.bam\>

## DESCRIPTION

\<renamefile\> is the file .info made by **facheck**, which contains the mapping of old name to new name.

## SEE ALSO

[reapr(1)](/reapr/1.md)