---
name: "reapr-preprocess"
section: "1"
platform: "linux"
package: "reapr"
version: "1.0.18+dfsg-7"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/reapr-preprocess"
---

# reapr-preprocess(1)

preprocess files for REAPR run

## NAME

reapr-preprocess - preprocess files for REAPR run

## SYNOPSIS

**reapr preprocess** \<assembly.fa\> \<in.bam\> \<outputdir\>

## SEE ALSO

[reapr(1)](/reapr/1.md)