---
name: "reapr-gapresize"
section: "1"
platform: "linux"
package: "reapr"
version: "1.0.18+dfsg-7"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/reapr-gapresize"
---

# reapr-gapresize(1)

calculates gap sizes based on read mapping

## NAME

reapr-gapresize - calculates gap sizes based on read mapping

## SYNOPSIS

**reapr gapresize** \[options\] \<assembly.fasta\> \<in.bam\> \<avg-fragment-length\> \<max-fragment-length\> \<outfileprefix\>

## OPTIONS

- **-g** \<int\>

  Only consider gaps of at least this length \[1\]

## SEE ALSO

[reapr(1)](/reapr/1.md)