---
name: "ragout-maf2synteny"
section: "1"
platform: "linux"
package: "ragout"
version: "2.3-5"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/ragout-maf2synteny"
---

# ragout-maf2synteny(1)

Reference-Assisted Genome Ordering UTility

## NAME

ragout-maf2synteny - Reference-Assisted Genome Ordering UTility

## SYNOPSIS

**maf2synteny** \[*-o out\_dir*\] \[*-s simpl\_params*\] \[*-m block\_sizes*\] *maf\_file*

## OPTIONS

### positional arguments:

- maf\_file

  path to maf file

### optional arguments:

- **-o** out\_dir

  path to the output directory \[default = .\]

**-s** simpl\_params path to a file with custom simplification parameters \[default = not set\]

- **-b** block\_sizes

  comma-separated list of synteny block scales \[default = 5000\]

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.