---
name: "rabema_prepare_sam"
section: "1"
platform: "linux"
package: "seqan-apps"
version: "2.4.0+dfsg-16"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/rabema_prepare_sam"
---

# rabema\_prepare\_sam(1)

Prepare SAM For Rabema

## NAME

rabema\_prepare\_sam - Prepare SAM For Rabema

## SYNOPSIS

**rabema\_prepare\_sam** **-i** *IN.sam* **-o** *OUT.sam*

## DESCRIPTION

Prepare SAM file for usage with RABEMA.

## OPTIONS

- **-h**, **--help**

  Display the help message.

- **--version**

  Display version information.

- **-i**, **--in-file** *INPUT\_FILE*

  Path to the input file. Valid filetype is: *.sam*.

- **-o**, **--out-file** *OUTPUT\_FILE*

  Path to the output file. Valid filetype is: *.sam*.

- **--dont-check-sorting**

  Do not check sortedness.