NAME
quorum_create_database - create database of k-mers for quorum error corrector
SYNOPSIS
create_database_cmdline [options] reads:path+
DESCRIPTION
Create database of k-mers for quorum error corrector
Create k-mer database for quorum_error_correct
OPTIONS
default value in (), *required:
- -s, --size=uint64
-
*Initial hash size
- -m, --mer=uint32
-
*Mer length
- -b, --bits=uint32
-
*Bits for value field
- -q, --min-qual-value=uint32
-
Min quality as an int
- -Q, --min-qual-char=string
-
Min quality as a ASCII character
- -t, --threads=uint32
-
Number of threads (1)
- -o, --output=path
-
Output file (combined_database)
- -p, --reprobe=int32
-
Maximum number of reprobes (126)
- -U, --usage
-
Usage
- -h, --help
-
This message
- -V, --version
-
Version
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.