NAME
qual_trim.py - Perform quality trimming for single-end reads.
DESCRIPTION
usage: qual_trim.py [-h] [-b BASE] [-p PROB] [-q SCORE] [-l BP] [--illumina5]
- [--solexa]
-
FASTQ
Perform quality trimming for single-end reads.
positional arguments:
- FASTQ
-
including stdin or compressed file {zip,gz,tar,bz}
optional arguments:
- -h, --help
-
show this help message and exit
- -b BASE
-
ASCII-encoded quality offset, e.g. 33 or 64 (default: 33)
- -p PROB
-
error probability cutoff (default: 0.1)
- -q SCORE
-
quality score cutoff (default: '-p 0.1')
- -l BP
-
minimum read length in bp (default: 16)
- --illumina5
-
Illumina 1.5+ encoding marked with 'B'
- --solexa
-
Solexa encoding
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.