pyfastx1
Fast random access to sequences from fasta/q file
Overview
usage: pyfastx COMMAND [OPTIONS]
A command line tool for FASTA/Q file manipulation
options:
-
-h, --help -
show this help message and exit
-
-v, --version -
show program's version number and exit
Commands:
index
|
build index for fasta/q file |
|---|---|
stat
|
show detailed statistics information of fasta/q file |
split
|
split fasta/q file into multiple files |
fq2fa
|
convert fastq file to fasta file |
subseq
|
get subsequences from fasta file by region |
sample
|
randomly sample sequences from fasta or fastq file |
extract
|
extract full sequences or reads from fasta/q file |
Releases
Unchanged in 2 releases since Debian 12 (Bookworm).