pybel1
Command line interface for pybel
Usage
pybel [OPTIONS]
COMMAND
[ARGS] ...
Overview
PyBEL is a pure Python package for parsing and handling biological
networks encoded in the Biological Expression Language (BEL) version
2. It also facilitates data interchange between common formats and
databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL,
and Neo4J.
Options
-
--version -
Show the version and exit.
-
-c, --connection TEXT -
Database connection string. [default: sqlite:////home/andreas/.pybel/pybel_0.14.0_cache.db]
-
--help -
Show this message and exit.
Commands:
compile
|
Compile a BEL script to a graph. |
|---|---|
insert
|
Insert a graph to the database. |
machine
|
Get content from the INDRA machine and upload to BEL Commons. |
manage
|
Manage the database. |
neo
|
Upload to neo4j. |
post
|
Upload a graph to BEL Commons. |
serialize
|
Serialize a graph to various formats. |
summarize
|
Summarize a graph. |
warnings
|
List warnings from a graph. |
Releases
Unchanged in 3 releases since Debian 11 (Bullseye).