pxtgen1

Usage

Overview

Generate all tree topologies for n (<= 10) taxa. Random tree samples are a-coming.

Options

-n, --ntax=INT

number of taxa

-r, --rooted

whether generated trees are rooted (default: false)

-c, --count

give the number of possible trees for n taxa and exit

-l, --label=STRING

prefix label for taxon names (default: 't')

-o, --outf=FILE

output file, STOUT otherwise

-h, --help

display this help and exit

-V, --version

display version and exit

-C, --citation

display phyx citation and exit

Citation

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.