pxtcol1

Usage

Overview

Add information to a tree so that you can color the edges. This will take nexus and newick inputs from a file or STDIN. Results are written in nexus format so that it can be read by figtree.

Options

-t, --treef=FILE

input tree file, STDIN otherwise

-m, --mrcaf=FILE

file with mrcas and annotations, tab separated

-d, --nodeidf=FILE

file with nodeids (labels) and annotations, tab separated

-o, --outf=FILE

output file, STOUT otherwise

-h, --help

display this help and exit

-V, --version

display version and exit

-C, --citation

display phyx citation and exit

Citation

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.