pxt2nex(1)

NAME

pxt2nex - convert from tree file to vanilla Nexus format

SYNOPSIS

pxt2nex [OPTIONS]...

DESCRIPTION

This will convert a tree file to vanilla Nexus format. This will take a newick- or nexus-formatted tree from a file or STDIN.

OPTIONS

-t, --treef=FILE: input tree file, STDIN otherwise

-o, --outf=FILE: output tree file, STOUT otherwise

-h, --help: display this help and exit

-V, --version: display version and exit

-C, --citation: display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown, Stephen A. Smith (blackrim)

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>