pxssort(1)

NAME

pxssort - sort sequences by id or length

SYNOPSIS

pxssort [OPTIONS]...

DESCRIPTION

Sort sequences by id or length. This will take fasta, phylip, and nexus formats from a file or STDIN.

OPTIONS

-s, --seqf=FILE: input sequence file, STDIN otherwise

-b, --sortby: what to sort by: 1:id (default) 2:id rev 3:length (<) 4:length (>)

-o, --outf=FILE: output sequence file, STOUT otherwise

-h, --help: display this help and exit

-V, --version: display version and exit

-C, --citation: display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Stephen A. Smith (blackrim), Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>