pxrevcomp1
Reverse complement sequences
Usage
pxrevcomp [OPTIONS] ...
[FILE] ...
Overview
Reverse complement sequences. This will take fasta, fastq, phylip, and nexus formats from a file or STDIN. Results are written in fasta format.
Options
-
-s, --seqf=FILE -
input sequence file, STDIN otherwise
-
-i, --ids=IDS -
a comma sep list of ids to flip (NO SPACES!)
-
-g, --guess -
EXPERIMENTAL: guess whether there are seqs that need to be rev comp. uses edlib library on first seq
-
-p, --pguess -
EXPERIMENTAL: progressively guess
-
-m, --sguess -
EXPERIMENTAL: sampled guess
-
-o, --outf=FILE -
output sequence file, STOUT otherwise
-
-h, --help -
display this help and exit
-
-V, --version -
display version and exit
-
-C, --citation -
display phyx citation and exit
Citation
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
Releases
3 releases since Debian 10 (Buster); the text changed 2 times.
--citation since Debian 12 (Bookworm);
--guess since Debian 12 (Bookworm);
--ids since Debian 12 (Bookworm);
--pguess since Debian 12 (Bookworm);
--sguess since Debian 12 (Bookworm);
-C since Debian 12 (Bookworm);
-g since Debian 12 (Bookworm);
-i since Debian 12 (Bookworm);
-m since Debian 12 (Bookworm);
-p since Debian 12 (Bookworm).