pxmrcaname(1) · carta

Usage

pxmrcaname [OPTIONS] ...

Overview

Label internal nodes with clade names. This will take a newick- or nexus-formatted tree from a file or STDIN, and an MRCA file with format:

: MRCANAME = tip1 tip2 ...

If no MRCA file is present, internal nodes will be labelled:

: px1, px2, ..., pxn

Output is written in newick format.

Options

-t, --treef=FILE: input newick tree file, STDIN otherwise

-m, --mrca=FILE: file containing MRCA declarations

-o, --outf=FILE: output newick file, STOUT otherwise

-h, --help: display this help and exit

-V, --version: display version and exit

-C, --citation: display phyx citation and exit

Citation

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Releases

3 releases since Debian 10 (Buster); the text changed 2 times.

10
12
13

--citation since Debian 12 (Bookworm); -C since Debian 12 (Bookworm).