pxlstr1

Usage

Overview

Print tree summary. By default returns all properties. Alternatively choose 1 property. This will take a newick- or nexus-formatted tree from a file or STDIN.

Options

-t, --treef=FILE

input tree file, STDIN otherwise

-r, --rooted

return whether the tree is rooted

-a, --age

return the height of root (must be rooted and ultrametric)

-n, --ntips

return the number of terminals

-u, --ultrametric

return whether tree is ultrametric

-b, --binary

return whether tree is binary

-l, --length

return the length of the tree

-i, --tiplabels

return all tip labels (one per line)

-v, --rtvar

return root-to-tip variance

-o, --outf=FILE

output tree stats file, STOUT otherwise

-h, --help

display this help and exit

-V, --version

display version and exit

-C, --citation

display phyx citation and exit

Citation

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.