pxlstr(1)

NAME

pxlstr - print tree summary

SYNOPSIS

pxlstr [OPTIONS]...

DESCRIPTION

Print tree summary. By default returns all properties. Alternatively choose 1 property. This will take a newick- or nexus-formatted tree from a file or STDIN.

OPTIONS

-t, --treef=FILE: input tree file, STDIN otherwise

-r, --rooted: return whether the tree is rooted

-a, --age: return the height of root (must be rooted and ultrametric)

-n, --ntips: return the number of terminals

-u, --ultrametric: return whether tree is ultrametric

-b, --binary: return whether tree is binary

-l, --length: return the length of the tree

-i, --tiplabels: return all tip labels (one per line)

-v, --rtvar: return root-to-tip variance

-o, --outf=FILE: output tree stats file, STOUT otherwise

-h, --help: display this help and exit

-V, --version: display version and exit

-C, --citation: display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>