---
name: "pxbp"
section: "1"
platform: "linux"
package: "phyx"
version: "1.3.2+ds-1"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/pxbp"
---

# pxbp(1)

print out bipartitions found in treefiles

## NAME

pxbp - print out bipartitions found in treefiles

## SYNOPSIS

**pxbp** \[*OPTIONS*\]...

## DESCRIPTION

This will print out bipartitions found in treefile. Trees are assumed rooted unless the **-e** argument is provided. This will take a newick- or nexus-formatted tree from a file or STDIN.

## OPTIONS

- **-t**, **--treef**=*FILE*

  input treefile, STDIN otherwise

- **-v**, **--verbose**

  give more output

- **-e**, **--edgeall**

  force edgewise (not node - so when things are unrooted) and assume all taxa are present in all trees

- **-u**, **--uniquetree**

  output unique trees and \*no\* other output

- **-m**, **--maptree**=*FILE*

  put the bipart freq on the edges of this tree. This will create a \*.pxbpmapped.tre file.

- **-c**, **--cutoff**

  skip biparts that have support lower than this.

- **-s**, **--suppress**

  don't print all the output (maybe you use this with the maptree feature

- **-o**, **--outf**=*FILE*

  output file, STOUT otherwise

- **-h**, **--help**

  display this help and exit

- **-V**, **--version**

  display version and exit

- **-C**, **--citation**

  display phyx citation and exit

## CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

## AUTHOR

Written by Stephen A. Smith (blackrim)

## REPORTING BUGS

Report bugs to: \<https://github.com/FePhyFoFum/phyx/issues\> phyx home page: \<https://github.com/FePhyFoFum/phyx\>

## COPYRIGHT

Copyright © 2017-2024 FePhyFoFum License GPLv3