pxboot1

Usage

Overview

Sequence alignment bootstrap or jackknife resampling. This will take fasta, fastq, phylip, and nexus formats from a file or STDIN. Results are written in fasta format.

Options

-s, --seqf=FILE

input sequence file, STDIN otherwise

-p, --partf=FILE

file listing empirical partitions: NAME = START-STOP[\INTERVAL]

-f, --frac=DOUBLE

jackknife percentage, default bootstrap (i.e. -f 1.0)

-x, --seed=INT

random number seed, clock otherwise

-o, --outf=FILE

output sequence file, STOUT otherwise

-h, --help

display this help and exit

-V, --version

display version and exit

-C, --citation

display phyx citation and exit

Citation

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.