pxbdfit1

Usage

Overview

Fit a lineage diversification model to a tree. This will take a newick- or nexus-formatted tree from a file or STDIN.

Options

-t, --treef=FILE

input treefile, STDIN otherwise

-m, --model=STRING

diversification model. either 'yule', 'bd' (default), or 'best'

-o, --outf=FILE

output file, STOUT otherwise

-h, --help

display this help and exit

-V, --version

display version and exit

-C, --citation

display phyx citation and exit

Citation

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.