---
name: "prot2codon"
section: "1"
platform: "linux"
package: "fsa"
version: "1.15.9+dfsg-6"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/prot2codon"
---

# prot2codon(1)

Find the codon alignment corresponding to the given protein alignment

## NAME

prot2codon - Find the codon alignment corresponding to the given protein alignment

## SYNOPSIS

**prot2codon** *\<multi-FASTA or Stockholm alignment\> \<FASTA file\>*

## DESCRIPTION

prot2codon from FSA 1.15.9

Find the codon alignment corresponding to the given protein alignment.

Input protein alignment must be in multi-FASTA or Stockholm format. Input nucleotide sequences must be in FASTA format.

## AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.