NAME
propmapped - toolkit for processing next-gen sequencing data
DESCRIPTION
propMapped v2.0.4
-
Calculate the proportion of mapped reads/fragments.
Usage:
-
./prommapped [options] -i <file>
Required arguments:
- -i <string>
-
An input file containing read mapping results. Both SAM or BAM formats are supported.
Optional arguments:
- -o <string>
-
Name of output file including mapping statistics.
- -f
-
If specified, fragments (read pairs) will be counted instead of individual reads. This option is only applicable for paired-end reads.
- -p
-
If specified, only properly paired reads will be counted. This option is only applicable for paired-end reads.
AUTHOR
This manpage was written by Alexandre Mestiashvili for the Debian distribution and
can be used for any other usage of the program.