prokka-uniprot_to_fasta_db1
Rapid annotation of prokaryotic genomes
Usage
prokka-uniprot_to_fasta_db [options]
<uniprot.dat>
Overview
-
--help -
This help.
--verbose!-
Verbose output (default '0').
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--separator=s -
Separator for gene/EC/product (default '~~~').
-
--blank=s -
Replace empty gene/EC/product with this (default '').
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--evidence=i -
1=prot 2=mrna 3=homol 4=pred 5=unsure (default '2').
--fragments!-
Include 'DE Flags: Fragment;' entries (default '0').
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--minlen=i -
Minimum peptide length (default '20').
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--term=s -
Lineage must contain this term eg. 'Bacteria' (default '').
--hypo!-
Don't filter out hypothetical proteins (default '0').