---
name: "prokka-uniprot_to_fasta_db"
section: "1"
platform: "linux"
package: "prokka"
version: "1.14.6+dfsg-6"
release: "Debian 13 (Trixie)"
platforms: ["linux"]
url: "https://new.carta.tech/prokka-uniprot_to_fasta_db"
---

# prokka-uniprot\_to\_fasta\_db(1)

rapid annotation of prokaryotic genomes

## NAME

prokka-uniprot\_to\_fasta\_db - rapid annotation of prokaryotic genomes

## SYNOPSIS

**prokka-uniprot\_to\_fasta\_db** \[*options*\] *\<uniprot.dat\>*

## DESCRIPTION

- **--help**

  This help.

- **--verbose**!

  Verbose output (default '0').

- **--separator**=*s*

  Separator for gene/EC/product (default '~~~').

- **--blank**=*s*

  Replace empty gene/EC/product with this (default '').

- **--evidence**=*i*

  1=prot 2=mrna 3=homol 4=pred 5=unsure (default '2').

- **--fragments**!

  Include 'DE Flags: Fragment;' entries (default '0').

- **--minlen**=*i*

  Minimum peptide length (default '20').

- **--term**=*s*

  Lineage must contain this term eg. 'Bacteria' (default '').

- **--hypo**!

  Don't filter out hypothetical proteins (default '0').