NAME
prokka-uniprot_to_fasta_db - rapid annotation of prokaryotic genomes
SYNOPSIS
prokka-uniprot_to_fasta_db [options] <uniprot.dat>
DESCRIPTION
- --help
-
This help.
- --verbose!
-
Verbose output (default '0').
- --separator=s
-
Separator for gene/EC/product (default '~~~').
- --blank=s
-
Replace empty gene/EC/product with this (default '').
- --evidence=i
-
1=prot 2=mrna 3=homol 4=pred 5=unsure (default '2').
- --fragments!
-
Include 'DE Flags: Fragment;' entries (default '0').
- --minlen=i
-
Minimum peptide length (default '20').
- --term=s
-
Lineage must contain this term eg. 'Bacteria' (default '').
- --hypo!
-
Don't filter out hypothetical proteins (default '0').